Hi,
Does anybody know what is the fifth column in a Scriputure (http://www.broadinstitute.org/software/scripture/) bed output for?
The documentation says Scripture also outputs RPKM, and this is the only column that appears to be RPKM, but why all single exon transcripts have zero value (see attached example)?
Thank you very much!
Does anybody know what is the fifth column in a Scriputure (http://www.broadinstitute.org/software/scripture/) bed output for?
The documentation says Scripture also outputs RPKM, and this is the only column that appears to be RPKM, but why all single exon transcripts have zero value (see attached example)?
Code:
chr29 194202 195851 chr29:194202-195851 0.0 * 194202 195851 0,0,0 1 1649, 0, chr29 376781 377122 chr29:376781-377122 0.0 * 376781 377122 0,0,0 1 341, 0, chr29 587298 607378 chr29:587298-607378 94.0 - 587298 607378 0,0,0 6 1377,160,118,138,185,35, 0,2848,465 3,7626,18776,20045, chr29 587298 607378 chr29:587298-607378 68.0 - 587298 607378 0,0,0 6 1377,142,118,138,185,35, 0,2866,465 3,7626,18776,20045, chr29 587298 607378 chr29:587298-607378 15.0 - 587298 607378 0,0,0 4 1377,138,185,35, 0,7626,18776,20045 ,
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