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Old 01-09-2009, 05:34 AM   #1
san
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Default Eland to ACE

Hi all,

I'm searching for a program/script to convert output from ELAND to ACE, in order to be visualized on EagleView. Anyone knows if it's possible?

Otherwise, anyone can tell me how can I visualize the alignment produced by ELAND?

Thank you very much!!!

-S-
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Old 01-09-2009, 06:51 AM   #2
zee
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Hi San,

You can convert eland format to MAQ's .map format (same applies to Novoalign and Bowtie formats if you use these aligners) and then use maqview that is available from the maq sourceforge site.
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Old 01-09-2009, 08:17 AM   #3
san
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Quote:
Originally Posted by zee View Post
Hi San,

You can convert eland format to MAQ's .map format (same applies to Novoalign and Bowtie formats if you use these aligners) and then use maqview that is available from the maq sourceforge site.
Thank you Zee! I'll try that!
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Old 01-10-2009, 05:56 AM   #4
baohua100
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you can use mapview http://evolution.sysu.edu.cn/english...re/mapview.htm

view your results


MapView 1.0

http://evolution.sysu.edu.cn/english...re/mapview.htm

Now can be downloaded from our lab website.

View short reads alignment

input file:
1. Reference sequence file and
2. Eland , SOAP, MAQ, SeqMap ... any formated alignment results file

MapView converts the input files to MSF format file.

MapView loads the MSF file,then you can view the alignment and SNPs.


Last edited by baohua100; 01-10-2009 at 07:51 AM.
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Old 01-11-2009, 05:43 PM   #5
zee
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It appears that there is only a version of mapview 1.0 for Windows. Will there be a linux/Mac release anytime soon?
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Old 01-13-2009, 04:28 AM   #6
lh3
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Probably a naive question: does mapview work with the mono project?
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