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Old 06-20-2011, 09:14 AM   #1
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Location: urbana.IL

Join Date: Jun 2011
Posts: 4
Unhappy Index between genome and mRNA

Hi. I finished calling SNP from genome resequencing data by using samtools. Now I need to know where the SNP located(5'-UTR, exon, intron, 3'UTR, et al). So is there any softwere I can use to build a index between genome and annotated mRNA so that I can calculate the variation of SNP in genes?
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genome, index, mrna, snp

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