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Old 07-22-2011, 12:02 PM   #1
cjose
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Default Error Message for read length

Getting this error:
Parameter read.length=35 does not agree with read file sequence length=50

I changed the read.length back to 50, but then it says the opposite:
"does not agree with read file sequence length=35"

Here is my ini file:

import global/global.ini
run_name = arupaRun1
sample_name = arupaSample1

reference = ${reference.dir}/ch11_12_validated.fasta
read.length = 35

mapping.run = 1
mapping.tagfiles.dir = ${reads.result.dir.1}
mapping.output.dir = ${output.dir}/chr
mismatch.level = 2

Any suggestions?
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Old 07-22-2011, 12:23 PM   #2
nilshomer
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What software? What was your command? Do you have a test case?
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Old 07-22-2011, 12:31 PM   #3
cjose
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I am running bioscope. I used 2 different ini files for two csfasta/qual reads. I keep getting this error. I have no test case. First time running bioscope.
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Old 07-22-2011, 12:33 PM   #4
cjose
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its a 50bp x 35bp paired-end if that helps
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