SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
BWA:high amount of unique alignments despite high mismatch tolerance moritzhess Bioinformatics 2 09-05-2011 12:31 PM
Help with Bowtie, only unique alignments khb General 1 12-16-2010 01:35 AM
More Unique ELAND Alignments Than Reads? seq7 Bioinformatics 2 10-06-2010 08:16 AM
Regarding Unique reads, Unique alignments sridharacharya RNA Sequencing 2 09-20-2010 06:39 AM
Unique VS Non-Unique read analysis samt Bioinformatics 2 09-29-2009 10:44 AM

Reply
 
Thread Tools
Old 10-19-2011, 03:03 PM   #1
onson001
Junior Member
 
Location: Minneapolis

Join Date: May 2011
Posts: 1
Default Galaxy: filtering for unique/reliable alignments

Anyone know if the samtools option for obtaining unique/reliable alignments (samtools view -bq 1 aln.bam > aln-reliable.bam) is available in Galaxy?
onson001 is offline   Reply With Quote
Old 10-20-2011, 05:47 PM   #2
tnabtaf
Member
 
Location: Oregon

Join Date: Jan 2011
Posts: 53
Default

Try subscribing to and then posting this question to the galaxy-user mailing list:

http://wiki.g2.bx.psu.edu/Mailing%20Lists
tnabtaf is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:03 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO