SEQanswers

Go Back   SEQanswers > Applications Forums > RNA Sequencing



Similar Threads
Thread Thread Starter Forum Replies Last Post
FPKM/RPKM without GFF/GFT file jgibbons1 Bioinformatics 2 02-22-2013 09:45 AM
GFT file for rat biofreak General 5 10-22-2012 07:17 AM
cufflinks output against annotation file masylichu Bioinformatics 1 09-19-2012 03:43 AM
Zero FPKM at some Cufflinks output file fuad193 Bioinformatics 1 06-07-2012 12:16 AM
Cufflinks sample file(test_data.sam) output snp_analyser Bioinformatics 0 06-07-2010 07:38 AM

Reply
 
Thread Tools
Old 10-18-2013, 04:28 PM   #1
KnowNothing2
Member
 
Location: Raleigh NC

Join Date: Sep 2013
Posts: 49
Default What is the actually output of a Cufflinks GFT file?

I've aligned my RNAseq data to the mouse genome using bowtie2, but I guess that output doesn't account for abundance, correct? So then you need to use cufflinks to quantify? Do I have this correct?
KnowNothing2 is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 05:14 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO