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Old 02-11-2010, 04:14 PM   #1
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Default Tophat Bug?


I'm not sure but I think --butterfly-search is incompatible with paired end analysis.

I tried running a paired end analysis with --butterfly-search and it ended up eating up my entire harddrive (it started creating a file >300Gb after joining segment_juncs hits).

I was successful with the paired end mapping once I removed that parameter.

Just an FYI in case anyone else came across this
jling is offline   Reply With Quote

--butterfly-search, harddrive space, incompatible, paired end

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