SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
tophat mapping bug? cedance Bioinformatics 2 11-11-2011 08:56 AM
TopHat 1.3.0 Splicing Bug ? Dario1984 Bioinformatics 11 09-16-2011 09:15 PM
tophat 1.3.0 bug?? peromhc Bioinformatics 16 06-18-2011 04:12 AM
bug for the tophat 1.3 beta liuxq Bioinformatics 4 06-09-2011 11:25 AM
TopHat bug telos Bioinformatics 0 03-17-2010 08:50 AM

Reply
 
Thread Tools
Old 02-11-2010, 04:14 PM   #1
jling
Junior Member
 
Location: 21218

Join Date: Oct 2009
Posts: 9
Default Tophat Bug?

Hi,

I'm not sure but I think --butterfly-search is incompatible with paired end analysis.

I tried running a paired end analysis with --butterfly-search and it ended up eating up my entire harddrive (it started creating a file >300Gb after joining segment_juncs hits).

I was successful with the paired end mapping once I removed that parameter.

Just an FYI in case anyone else came across this
jling is offline   Reply With Quote
Reply

Tags
--butterfly-search, harddrive space, incompatible, paired end

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 01:41 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO