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Old 04-12-2010, 09:56 AM   #1
JohnK
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Default .baf 2 BED

Hello,

.baf from BFAST alignment output to .BED format? Thanks.

J
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Old 04-12-2010, 10:55 AM   #2
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Originally Posted by JohnK View Post
Hello,

.baf from BFAST alignment output to .BED format? Thanks.

J
There are many ways. You can convert the BAF file to the SAM/BAM format using the "bfast postprocess" option, which you should use anyways to prioritize alignments. Then you can write your own program or check out this thread to convert SAM/BAM to BED.
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Old 04-12-2010, 12:07 PM   #3
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I think it's time for a giant table of file formats..."I have" vs "I want"....
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Old 04-13-2010, 11:45 AM   #4
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I think it's time for a giant table of file formats..."I have" vs "I want"....
That'd be huge.
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