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Old 12-22-2010, 02:28 AM   #1
Location: Oslo

Join Date: Dec 2010
Posts: 15
Exclamation Human exon, intron and promotor bedfile

I have done a chip-seq analysis and got a file with name peaks.bed I want to investigate if the peaks are in the promotor, exon og intron of hg19. Does somebody know where to get the bedfiles of promotor, exon and intron of humans?
I've tried UCSC genomebrowser and Table, but when I use intersectbed, this files consist of many different transcripts or something like that. Does somebody know how to get this?

Thanks a lot
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Old 12-22-2010, 05:47 AM   #2
Location: Connecticut

Join Date: Jun 2009
Posts: 74

ucsc table shouldwork
choose the BED format for the table you need to download
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