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Old 11-26-2017, 09:39 AM   #1
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Location: italy

Join Date: Nov 2017
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Post Plink

Hi everyone. Do u know what to do when a "nan" error is given from plink, reading map files ? I tried to put 0 instead of nan, or put the previously genetic distance , but either there is an error message from a text editor "file corrupted" or plink does not recognize it. Can u help me please?
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Old 05-06-2020, 01:00 PM   #2
Location: New Delhi

Join Date: Sep 2010
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Default GTEx PLINK format

Can anyone tell me that how are the PILOT data in GTEx format arranged. I mean PLINK states that for each row in .MAP file there are 2 columns for genotype information in .PED file. However, for GTEx data, this does not look to be the case ??
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