Hi all,
I'm trying to merge 2 genome assemblies using metassembler (http://sourceforge.net/projects/metassembler/).
Unfortunately, I don't have jumping libraries for my assemblies but a colleague told me that I could "simulate" them consistently using the reads I have.
As a computer scientist, I don't know much about jumping libs, and I have no idea on how to simulate them.
The genome assemblies I have are in fasta format, and reads in fq.
It would be very nice to get any help on the matter, even starting with references to get a better understanding of jumping libs (I've already read the wikipedia page several times ).
Thanks a lot !
mjm
I'm trying to merge 2 genome assemblies using metassembler (http://sourceforge.net/projects/metassembler/).
Unfortunately, I don't have jumping libraries for my assemblies but a colleague told me that I could "simulate" them consistently using the reads I have.
As a computer scientist, I don't know much about jumping libs, and I have no idea on how to simulate them.
The genome assemblies I have are in fasta format, and reads in fq.
It would be very nice to get any help on the matter, even starting with references to get a better understanding of jumping libs (I've already read the wikipedia page several times ).
Thanks a lot !
mjm
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