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Old 07-09-2014, 03:30 PM   #1
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Location: reno

Join Date: Jul 2014
Posts: 2
Default SSPACE error This Perl not built to support threads


When I try to run SSPACE on SGE, I got the following error
How can I fix it? any suggestions?


This Perl not built to support threads
Compilation failed in require at /scratch/bins/SSPACE-STANDARD-3.0_linux-x86_64/bin/ line 11.
BEGIN failed--compilation aborted at /scratch/bins/SSPACE-STANDARD-3.0_linux-x86_64/bin/ line 11.
Your inserted inputs on [SSPACE_Standard_v3.0_linux] at Wed Jul 9 16:17:33 2014:
Required inputs:
-l = /home/scratch/bins/SSPACE-BASIC-2.0_linux-x86_64/library_kl.txt
Number of paired files = 3
-s = /home/scratch/data/assembly/kl/HGAP_all/data/draft_assembly.fasta
-b = draft_scaffold

Optional inputs:
-x = 0
-z = 1000
-k = 5
-g = 0
-a = 0.7
-n = 15
-T = 1
-p = 0


Process 'reading files' failed on Wed Jul 9 16:17:33 2014
lastnameha is offline   Reply With Quote
Old 07-10-2014, 12:39 AM   #2
Location: UK

Join Date: Jan 2011
Posts: 14

You need to compile the multi-threading when you install/compile the perl using '-Dusethreads'
Phoenix_ICE is offline   Reply With Quote

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