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  • #1

    Vcf gui

    Hello,
    I have annotated my vcf files using SnpSift/SnpEff. Now I'm looking for a gui to view and filter my vcf files.

    Until now I only found vcf-miner which looks promising. But I didn't manage to get it run. Neither under windows nor under linux.

    So, did someone knows other tools?

    fin swimmer
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  • #2
    It's not free (I build it at Golden Helix for a living) but VarSeq is a commercial solution for doing this.

    VarSeq | Golden Helix, Inc.
    http://goldenhelix.com/products/VarSeq/
    VarSeq is the world's leading clinical variant interpretation solution for genomic variant analysis, fully integrated with CNV, AMP, and ACMG guidelines. Trial the top next-generation sequencing platform for free today.


    There are various command line utilities that are free, such as exomiser[0], but not aware of any polished GUI tools that are free.

    [0] http://www.sanger.ac.uk/science/tools/exomiser

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