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Old 03-07-2019, 01:33 AM   #1
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Location: Spain

Join Date: Mar 2019
Posts: 1
Default Extract annotated differentially methylated sites using methylkit

Hi everybody,

I've obtained differentially methylated sites and its annotation using the
R package called methylkit. What I want is to export a table with the following data:

- chromosome
- start
- end
- strand
- pvalue
- qvalue
- differential methylation value
- associated feature (promoter, exon, intron...)
- name of the nearest gene

How can I do this?

Thanks in advance!
b.soriano is offline   Reply With Quote

methyl-seq, methylkit

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