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Old 03-17-2017, 02:53 PM   #1
cascoamarillo
Senior Member
 
Location: MA

Join Date: Oct 2010
Posts: 156
Default TFR output alignment into fasta?

Hi There,
Does anyone know how to convert the output alignment results from Tandem repeat finder (https://tandem.bu.edu/trf/trf.html) into a fasta representation (fasta, clustal, etc...).

I have check some parsers, like convert the .dat file into gff, though nothing about turning the alignment (http://tandem.bu.edu/trf/trf.definitions.html#alignment) into some fasta file; which from my perspective would be a better ideal representation. Thanks
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