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#1 |
Junior Member
Location: Delhi Join Date: Nov 2010
Posts: 2
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Hi,
I want some problem in loading data to visualisation tools. I want to do annotations for methylcytosines (mCs) in three sequence contexts: CG, CHH, CHG of two foxtail millet cultivars (IC4 & IC41) specifying following regions in the genome such as Gene, 3prime_UTR, 5prime_UTR, exon CDS, Intron, TSS, Promoter (1.5kb upstream), upstream (1.5kb), TE and smRNA I have summary data of plant samples of two cultivars in the following format. 9 618 618 100 1 0 9 626 626 100 1 0 9 638 638 100 1 0 9 642 642 100 1 0 9 662 662 100 1 0 9 672 672 100 1 0 9 689 689 66.6666666666667 2 1 9 700 700 50 2 2 9 720 720 100 4 0 9 726 726 100 4 0 Please let me know how to proceed for analysis and visualize Thanks in advance |
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Tags |
annotate, methylation, visualization |
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