Hi everyone,
Sorry if the answer exists somewhere, but I have tried searching and have had no luck finding the answer to a possibly naive question.
I'm simply looking for a way to bin aligned reads (or similar chr/start/end data) into user-defined bin sizes and output into a txt file with bin densities (chr/start-bin/end-bin/total read density in bin).
I also have density per base from bedtools genomeCov (chr/pos/density) and I'm curious how I could bin this format as well (ie. chr/start-bin/end-bin/total bin density).
Any help would be greatly appreciated,
David Cook
Sorry if the answer exists somewhere, but I have tried searching and have had no luck finding the answer to a possibly naive question.
I'm simply looking for a way to bin aligned reads (or similar chr/start/end data) into user-defined bin sizes and output into a txt file with bin densities (chr/start-bin/end-bin/total read density in bin).
I also have density per base from bedtools genomeCov (chr/pos/density) and I'm curious how I could bin this format as well (ie. chr/start-bin/end-bin/total bin density).
Any help would be greatly appreciated,
David Cook
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