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Hello Hi
Im very new in this field and learning from scratch, hope anyone here can guide me with my analysis..im working on eukaryote species (trichoderma). Im starting out with ~25,000 contigs....If i want to do gene prediction, what is the most suitable tool for beginners like me..im not really familiar wtih programming..im using cygwin...i try to install MAKER but never success...i've been trying for months but its really hard as no one can guide me. Ive tried using FGENESH under molquest program but it dont provide the gff file output.
and how am i going to proceed from the abinitio predicted genes to homology based gene prediction..what are the appropriate input and output file format.
Im very new in this field and learning from scratch, hope anyone here can guide me with my analysis..im working on eukaryote species (trichoderma). Im starting out with ~25,000 contigs....If i want to do gene prediction, what is the most suitable tool for beginners like me..im not really familiar wtih programming..im using cygwin...i try to install MAKER but never success...i've been trying for months but its really hard as no one can guide me. Ive tried using FGENESH under molquest program but it dont provide the gff file output.
and how am i going to proceed from the abinitio predicted genes to homology based gene prediction..what are the appropriate input and output file format.