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Old 05-07-2019, 10:39 PM   #1
scubachris
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Default Quick way to QC processed RNA-Seq data

Greetings,

Is there some software/library that will automatically perform a data consistency check and possibly heatmaps on processed RNA-Seq datasets from GEO?
(for example https://www.ncbi.nlm.nih.gov/geo/que...?acc=GSE106420)
Writing the code to do this in Python/R should not be a problem for me, I was just wondering if there's already an available solution.
Thank you.
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Old 05-08-2019, 03:17 AM   #2
GenoMax
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What do you mean by "data consistency check"?

RNASeQC is a general program for RNAseq QC.
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Old 05-08-2019, 03:25 AM   #3
scubachris
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For example to see if housekeeping genes with high expected expressions are indeed so across all samples.
Thank you, I will have a look at this program.
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