Hi,
Does anyone knows if Cufflinks (and Cuffdiff) use reads that were mapped to more than one location?
(The additional locations appear in my sam file after XA:Z attribute, I used BWA aligner).
Thanks,
Rachelly.
Does anyone knows if Cufflinks (and Cuffdiff) use reads that were mapped to more than one location?
(The additional locations appear in my sam file after XA:Z attribute, I used BWA aligner).
Thanks,
Rachelly.
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