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  • Plink

    Hi everyone. Do u know what to do when a "nan" error is given from plink, reading map files ? I tried to put 0 instead of nan, or put the previously genetic distance , but either there is an error message from a text editor "file corrupted" or plink does not recognize it. Can u help me please?

  • #2
    GTEx PLINK format

    Can anyone tell me that how are the PILOT data in GTEx format arranged. I mean PLINK states that for each row in .MAP file there are 2 columns for genotype information in .PED file. However, for GTEx data, this does not look to be the case ??

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