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Old 06-28-2011, 07:53 AM   #1
Rajendra
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Location: Europe

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Default Evolutionary conserved sequences

Hello Everyone,I am looking for Evolutionary conserved sequences in vertebrates around my gene of intrest from Human.
I had been using ECR Browser (http://ecrbrowser.dcode.org/) for it.
It is still based on Hg 18 assembly.

So I would like to know of other alternative approach or a tool based on Hg 19 which has got good display and sequence retrieval system.
Or would it really make a big difference using Hg 18 or hg 19 assembly.

How to do the same on UCSC browser..?

May be If this can be solved by some programming approach.

Please help me out.
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Old 06-28-2011, 10:22 AM   #2
biznatch
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Default

The UCSC Genome Browser has several tracks for analyzing conservation across species, look in the in particular the "Comparative Genomics" tracks near the bottom. There are many options within some of those tracks to be sure to check them out.
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Old 07-15-2011, 12:34 AM   #3
Rajendra
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Thanks
for the information,Well I even want to compare the conserved sequences with the CHIP seq data,Which is publickly available so that I can get the coordinates for them and the peaks,
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