Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Issues with Mira

    Hi pals


    Recently, my objective is to assemble some reads sequenced with Illumina/Solexa in fastq format (around 12 millions reads)...

    I've chosen MIRA to make this work, i typed the command:

    mira --project=assembly-H12-NoBackBone --job=denovo,genome,accurate,solexa
    But unfortunately, i'm getting the next error:

    Loading data from FASTQ file:
    [0%] ....|.... [10%] ....|.... [20%] ....|.... [30%] ....|.... [40%] ....|.... [50%] ....|.... [60%] ....|.... [70%] ....|.. zsh: killed
    I've been reading about this 'zsh:killed' error, and found too little, as far as I understand, it seems that there's no error from MIRA but ZSH (or some linking program which MIRA uses)

    Somebody knows how can I find that?

    Additional Info: I'm using MIRA from the Bio-Linux repos, I'm going to compile by myself, maybe it should work.

  • #2
    I would guess you are running up against a quota limit and your job is being killed by the shell. Try running ulimit -a and see whether there are strict user limits for your account. You may need to relax some, e.g. memory usage.

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Strategies for Sequencing Challenging Samples
      by seqadmin


      Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
      03-22-2024, 06:39 AM
    • seqadmin
      Techniques and Challenges in Conservation Genomics
      by seqadmin



      The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

      Avian Conservation
      Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
      03-08-2024, 10:41 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 03-27-2024, 06:37 PM
    0 responses
    12 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-27-2024, 06:07 PM
    0 responses
    11 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-22-2024, 10:03 AM
    0 responses
    53 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 03-21-2024, 07:32 AM
    0 responses
    69 views
    0 likes
    Last Post seqadmin  
    Working...
    X