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  • Issue Exporting Blast Data

    Hi Everyone,

    I recently started working with the blast command line, and I seem to have hit a road block.

    My directories look like this blast -> dbs, out, query
    I loaded my ncbi_blast using [module load ncbi_blast]

    Then I ran it using the command line [makeblastdb -in Zfish -dbtype prot]

    Inside of the dbs folder I have a unpacked files called Zfish, Zfish.phr, Zfish.pin, Zfish.psq

    My question is how do I make this Zfish blast result file into a .html file in the out folder? I want to be able to extract it using FileZilla once it is done. I tried running [$ makeblastdb -in Zfish -dbtype prot -out Zfish.html] but all it made was the same files with a .html prefix.

    Please let me know if you have a solution to this issue. Any advice will be greatly appreciated.

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