Hey guys, I am running into a really weird problem in my RNA-seq analysis pipeline. In my final DESeq2 output, in the first column where the gene names are, there are a few entries that are purely dates with corresponding DESeq2 analysis. It makes no sense, I even have 12/1/2014 in there.. This is consistent across multiple runs through the analysis pipeline. Anyone else had this problem before?
Example of what I see:
HGS 3683.112663 0.130896607 0.111611495 1.17278786 0.240880888 0.932952701
2-Mar 692.3726347 0.194663432 0.165998807 1.172679702 0.240924274 0.932952701
CNTNAP3 167.220247 -0.285623039 0.243693625 -1.172057901 0.24117381 0.933557997
or:
DDX53 0 NA NA NA NA NA
DEAR 0 NA NA NA NA NA
1-Dec 0 NA NA NA NA NA
DEF6 16.53633559 0.56896377 0.269345768 2.112391716 0.034652865 NA
DEFA1 0 NA NA NA NA NA
Example of what I see:
HGS 3683.112663 0.130896607 0.111611495 1.17278786 0.240880888 0.932952701
2-Mar 692.3726347 0.194663432 0.165998807 1.172679702 0.240924274 0.932952701
CNTNAP3 167.220247 -0.285623039 0.243693625 -1.172057901 0.24117381 0.933557997
or:
DDX53 0 NA NA NA NA NA
DEAR 0 NA NA NA NA NA
1-Dec 0 NA NA NA NA NA
DEF6 16.53633559 0.56896377 0.269345768 2.112391716 0.034652865 NA
DEFA1 0 NA NA NA NA NA
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