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Old 01-10-2013, 02:56 AM   #1
desmo
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Smile Available tumor-normal dataset with result (CNV, Snp and Indels)

Hi everyone.
I'm working on cancer genomes analisys and I would like to test the result of my pipeline.
Do you know where I can find some available dataset (something like NCBI sra) that have information about found CNV, Snp and Indels.
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Old 01-21-2013, 04:41 AM   #2
LI Jia
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You can go to the resource bundle of GATK to download Snp data called "dbsnp_137.hg19.vcf".
ftp://ftp.broadinstitute.org/bundle/2.3/hg19/
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