Dear,
I sequenced 5 genes using truseq custom amplicon kit on Miseq. But if I process the data using bwa + samtools, the results seem to be not good.
Anyone has any idea about the pipeline of analysis? (for alignment and snpcalling)?
thank you al lot
ME
I sequenced 5 genes using truseq custom amplicon kit on Miseq. But if I process the data using bwa + samtools, the results seem to be not good.
Anyone has any idea about the pipeline of analysis? (for alignment and snpcalling)?
thank you al lot
ME
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