Hi NGS user,
does anyone know how I can set a minimum coverage threshold in variant calling in samtools mpileup and in GATK Unified Genotyper. I only find parameter to set max per-BAM depth to avoid excessive memory usage.
Thanks a lot,
ME
does anyone know how I can set a minimum coverage threshold in variant calling in samtools mpileup and in GATK Unified Genotyper. I only find parameter to set max per-BAM depth to avoid excessive memory usage.
Thanks a lot,
ME
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