I am trying to do RNAseq PE alignment using STAR. It works for one pair of fq files:
$ STAR --runThreadN 30 --genomeDir /srv/STAR_genome/human/ --readFilesIn /../RNA4_1_R1.fastq.gz /../RNA4_1_R2.fastq.gz --readFilesCommand zcat
However, I have multiple fq files for one sample and I need to align them into one sam file. When I tried to align all together, it returns 'Segmentation fault (core dumped)':
$ STAR --runThreadN 30 --genomeDir /../STAR_genome/human/ --readFilesIn /../RNA4_1_R1.fastq.gz /../RNA4_1_R2.fastq.gz /srv/RNA4_2_R1.fastq.gz /../RNA4_2_R2.fastq.gz --readFilesCommand zcat
Segmentation fault (core dumped)
Could STAR deal with multiple pairs? What am I missing, pls?
$ STAR --runThreadN 30 --genomeDir /srv/STAR_genome/human/ --readFilesIn /../RNA4_1_R1.fastq.gz /../RNA4_1_R2.fastq.gz --readFilesCommand zcat
However, I have multiple fq files for one sample and I need to align them into one sam file. When I tried to align all together, it returns 'Segmentation fault (core dumped)':
$ STAR --runThreadN 30 --genomeDir /../STAR_genome/human/ --readFilesIn /../RNA4_1_R1.fastq.gz /../RNA4_1_R2.fastq.gz /srv/RNA4_2_R1.fastq.gz /../RNA4_2_R2.fastq.gz --readFilesCommand zcat
Segmentation fault (core dumped)
Could STAR deal with multiple pairs? What am I missing, pls?
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