Hi,
I have few questions about bwa,
1. Is it necessary to generate a bunch of files when I do the indexing, I know .bwt, may be useful for alignment, but files like .pac are not being used somewhere, right?
2. for the amb and ann files, I know they represent the n_holes and n_seqs elements, but how to read them.
3. If I want to compare the results with Maq, which output file contains the error rate, or other stats.
thanks
I have few questions about bwa,
1. Is it necessary to generate a bunch of files when I do the indexing, I know .bwt, may be useful for alignment, but files like .pac are not being used somewhere, right?
2. for the amb and ann files, I know they represent the n_holes and n_seqs elements, but how to read them.
3. If I want to compare the results with Maq, which output file contains the error rate, or other stats.
thanks
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