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  • Converting DIAMOND output to fasta format

    Hello all,

    I am trying to convert a DIAMOND output from a reference genome into a fasta file so I can use it as a database for subsequent DIAMOND annotations. Currently, the file is in .txt format with the columns going


    Gene ID -- CAZy ID -- % Identical -- Length -- Mismatches -- Gap Open -- Gene Start -- Gene End -- CAZy Start -- CAZy End -- E Value -- Bit Score


    As of now, I don't necessarily have an idea of how to figure out the sequences that correspond to each row, so I'm not sure how to really parse the output file to create a fasta file. Any help or advice would be much appreciated.

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