hi,
those days i attempt to perform a BS-seq data analysis with my rice data. after alignment and methylation calling,there will be a DMR identification step next from methylation calling result according to common analysis procedure.
In order to do this ,the target region should be initially defined and then identifed by statistic method . so how to define this region'size? a fix window size? certain number of CpG island ?or some functional component ?
those days i attempt to perform a BS-seq data analysis with my rice data. after alignment and methylation calling,there will be a DMR identification step next from methylation calling result according to common analysis procedure.
In order to do this ,the target region should be initially defined and then identifed by statistic method . so how to define this region'size? a fix window size? certain number of CpG island ?or some functional component ?