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Old 08-29-2012, 09:21 PM   #1
paulsydney
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Location: Sydney

Join Date: Nov 2011
Posts: 6
Default Analysis of CLIPseq data

Hi all,

I am wondering if anyone has any sugggestion on how to go about analysing CLIPseq data. I am more of a biologist and I have a very limited exposure to next gen sequencing world until recently; I feel there are so many knowledge gaps in my brain that need patching. So far, I have managed to clean up my data and mapped them to human genome using bowtie.

Currently, I am trying to work how to synthesize interesting information out of my CLIP data. I am currently going through this recent publication http://www.sciencedirect.com/science...2867412008859#.

Is there anyone in the forum that has recently established any CLIPseq analysis pipeline or has any experience in working with CLIP data? I am keen to hear from you.

If you have any suggestion for me, please let me know too.

Regards.
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