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Old 01-09-2013, 08:31 AM   #1
giuliano stirparo
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Location: Italy

Join Date: Nov 2011
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Default Annotate coordinates

Hi all
I am wondering if you know a way to determine if a set of chromosome coordinates (chr1:101598917;chr1:101598918;ect), lays in CDS, UTR, Flanking region etc.
In particular the sets of coordinates are SNPs and I wish to keep those that lay in CDS region.
Thank you
Giuliano
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Old 01-10-2013, 10:55 PM   #2
miroslav
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Default

Hi Guliano,
If you have SNP rs designations you can try NCBI batch query - chromosome report
miroslav
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cds, coordinates, snp, utr

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