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Old 04-15-2013, 08:43 PM   #1
kushald
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Location: Bangalore, India

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Default bam files according to chromosome name

Dear All

I have few BAM files. There are 12 chromosomes for this organism. I want to separate BAM files for each of the 12 chromosomes (For eg, Chr 1 Name, then followed by the sequence. Likewise for all 12 chromosomes). Was wondering if it could be done using SAMTOOLS? Please help..

Many thanks

Kushal
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Old 04-15-2013, 10:58 PM   #2
kushald
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Well. Got the solution. I used bamtools to do it. There is an option in bamtools called as bamtools split which served the purpose. Thanks anyways
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