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Old 01-23-2010, 02:38 PM   #1
Location: Australia

Join Date: Jun 2009
Posts: 34
Default ask help for identification of novel transcripts

Can anyone help me out with this problem?

I have run my mRNA sequencing samples by TopHat.

I understand that junctions.bed gives out all the possible splices, but how can I dig out the novel form from all these data? Any tool available ?Not simply by eyeballing through UCSC genome browser after loading the bed file?

Thanks in advance.
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