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Old 05-04-2017, 11:49 AM   #1
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Location: Texas

Join Date: May 2017
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Default Falcon PacBio assembler error


I am trying to assemble a genome using Falcon's Pacbio Assembler. I keep running into an error and 1 job is left incomplete. I am using PacBio Fasta reads. Has anyone overcome this error? Below is the error I see during the error correction step.

[ERROR]Task Node(0-rawreads/merge-scatter) failed with exit-code=256 [INFO]recently_satisfied: set([]) [INFO]Num satisfied in this iteration: 0 [INFO]Num still unsatisfied: 1 [ERROR]Some tasks are recently_done but not satisfied: set([Node(0-rawreads/merge-scatter)]) [ERROR]ready: set([]) submitted: set([]) Traceback (most recent call last): File "/media/trish/HD1/PacBioStuff/FALCON-integrate/fc_env/bin/", line 6, in <module> exec(compile(open(__file__).read(), __file__, 'exec')) File "/media/trish/HD1/PacBioStuff/FALCON-integrate/FALCON/src/py_scripts/", line 5, in <module> main(sys.argv) File "/media/trish/HD1/PacBioStuff/FALCON-integrate/FALCON/falcon_kit/mains/", line 461, in main main1(argv[0], args.config, args.logger) File "/media/trish/HD1/PacBioStuff/FALCON-integrate/FALCON/falcon_kit/mains/", line 136, in main1 input_fofn_plf=input_fofn_plf, File "/media/trish/HD1/PacBioStuff/FALCON-integrate/FALCON/falcon_kit/mains/", line 253, in run wf.refreshTargets(exitOnFailure=exitOnFailure) File "/media/trish/HD1/PacBioStuff/FALCON-integrate/pypeFLOW/pypeflow/", line 226, in refreshTargets self._refreshTargets(updateFreq, exitOnFailure) File "/media/trish/HD1/PacBioStuff/FALCON-integrate/pypeFLOW/pypeflow/", line 297, in _refreshTargets failures, len(unsatg))) Exception: We had 1 failures. 1 tasks remain unsatisfied.
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genome assembly, pacbio correction

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