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  • Alternatives to sfffile & sffinfo

    Is there any other way to extract the reads from SFF files without using sfffile and/or sffinfo? I know MatLab can also perform this task but I guess I am looking for a different option.

  • #2
    One I know of but have no experience with is mentined here: http://blog.malde.org/index.php/2008...binary-format/

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    • #3
      sff_extract

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      • #4
        kmcarr

        Thank you very much! I have read a lot about sff extract and I just simply forgot about it. Now I just need to find out whether sff_extract can split the files by MIDs and I will be good to go.
        Last edited by Xterra; 06-28-2010, 07:15 AM.

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        • #5
          Why don't you want to use sffinfo/sfffile? It's fast and simple :-)

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          • #6
            : )

            I am actually using sfftools now but I am trying to migrate my pipeline to Windows.

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