Hi,
I have mapped 100 bp Illumina reads to my reference genome and I wondered if there is any tool that can create an assembly of my reads from the bam file I created or if I have to start with the fastq files again using a reference based assembler.
Maybe I am missing something, but shouldn't it be fairly easy to assembly scaffolds from bam files?
I have mapped 100 bp Illumina reads to my reference genome and I wondered if there is any tool that can create an assembly of my reads from the bam file I created or if I have to start with the fastq files again using a reference based assembler.
Maybe I am missing something, but shouldn't it be fairly easy to assembly scaffolds from bam files?
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