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  • HGVS to hg19 conversion

    Hi,

    Is there any command line tool or method that allow for an easy translation from HGVS to hg19 coordinates?
    for example:

    as an inptu I'd like to provde: NM_001100.3:c.7G>T and the output should be like hg19:229568857:229568858.

    Thanks in advance

  • #2
    Take a look at Mutalyzer . I copied and pasted "NM_001100.3:c.7G>T" into the box and get NC_000001.10:g.229568856C>A as the result.

    Justin

    Comment


    • #3
      Seems promising. I will examine Web Serivices they provide.
      Thank you

      Comment

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