Hi, dear patrons
i had an error when running HT-seq in python.
******$ python
Python 2.6.1 (r261:67515, Aug 2 2010, 20:10:18)
[GCC 4.2.1 (Apple Inc. build 5646)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import HTSeq
>>> import numpy
>>> htseq-count --mode=intersection-nonempty CAR01_tophatHits_sorted.bam merged.gtf >> CAR01_gene_counts.txt
File "<stdin>", line 1
htseq-count --mode=intersection-nonempty CAR01_tophatHits_sorted.bam merged.gtf >> CAR01_gene_counts.txt
^
SyntaxError: invalid syntax
i cannot figure out the problem. Can anyone give me some suggestions and hints?
I will appreciated it a lot.
Best wishes
Li
i had an error when running HT-seq in python.
******$ python
Python 2.6.1 (r261:67515, Aug 2 2010, 20:10:18)
[GCC 4.2.1 (Apple Inc. build 5646)] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import HTSeq
>>> import numpy
>>> htseq-count --mode=intersection-nonempty CAR01_tophatHits_sorted.bam merged.gtf >> CAR01_gene_counts.txt
File "<stdin>", line 1
htseq-count --mode=intersection-nonempty CAR01_tophatHits_sorted.bam merged.gtf >> CAR01_gene_counts.txt
^
SyntaxError: invalid syntax
i cannot figure out the problem. Can anyone give me some suggestions and hints?
I will appreciated it a lot.
Best wishes
Li
Comment