Hi
I want to generate a genome using STAR for subsequent steps.
I got the genome.fa file from UCSC for my organism (dm).
I ran:
However it has been 15 h now and it is stuck at:
Does it usually take this long or am I doing something wrong?
I have a quad-core CPU with 16 GB RAm, and do not see any unsusal SWAP activity. The CPU usage for STAR is 25-30%.
Any suggestions/corrections will be appreciated.
Thanks.
Manu
I want to generate a genome using STAR for subsequent steps.
I got the genome.fa file from UCSC for my organism (dm).
I ran:
Code:
/home/STAR --runMode genomeGenerate --genomeDir /media/star_pipe --genomeFastaFiles genome.fa /media/star_pipe runThread 4
Code:
Starting to generate Genome files
I have a quad-core CPU with 16 GB RAm, and do not see any unsusal SWAP activity. The CPU usage for STAR is 25-30%.
Any suggestions/corrections will be appreciated.
Thanks.
Manu
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