Hi,
So I'm new to using cuffmerge. I have all of my .bam files from the output of cufflinks and want to combine them using cuffmerge. I'm a bit confused about the command line usage of cuffmerge. It says to 'input GTF files must be specified in a “manifest” file listing full paths to the files'. I'm vaguely aware of what a manifest file is, but not really sure how to go about making one from my .gtf files.
Any help?
Thanks
So I'm new to using cuffmerge. I have all of my .bam files from the output of cufflinks and want to combine them using cuffmerge. I'm a bit confused about the command line usage of cuffmerge. It says to 'input GTF files must be specified in a “manifest” file listing full paths to the files'. I'm vaguely aware of what a manifest file is, but not really sure how to go about making one from my .gtf files.
Any help?
Thanks
Comment