I am looking for a Next Generation Sequencing Data Analysis workshop in Italy for this year. I am mostly interested in RNA-seq technologies, like SAMtools, Tophat2, Bowtie... Can anyone help me? Do you now any source to find one?
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The only one I can think of, in Bressanone/Brixen, focuses on R/Bioconductor
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You should not strictly need to wait for workshops to learn RNAseq data analysis. You can actually do a lot on your own. There are courses on edX, coursera that are more formal but you will find many other learning resources on the net.
You have the entire @SeqAnswers community behind you should you need help.
If you prefer a workshop format then this one is in Germany: http://seqanswers.com/forums/showthread.php?t=64508 in February 2016.
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