Hi all,
I have the raw mRNA-Seq/Bisulfite-Seq data for multiple cell types (in sra format). I want to know if there is a research article or website where I can find the standard pre-processing steps for both types of data. For example:
1) quality based filtering
2) read trimming
3) coverage threshold
4) mapping criteria (multiple mapping issue,...etc)
...etc
I have the raw mRNA-Seq/Bisulfite-Seq data for multiple cell types (in sra format). I want to know if there is a research article or website where I can find the standard pre-processing steps for both types of data. For example:
1) quality based filtering
2) read trimming
3) coverage threshold
4) mapping criteria (multiple mapping issue,...etc)
...etc
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