Dear PacBio Gods,
I'd like to know how (or if it is possible) to start a smrtpipe job with .cmp.h5 instead of .bas.h5 files? Say for instance I sucessfully ran a realigning job with smrtpipe which generates a couple of files of which a .cmp.5. Then I'd like to run the RS_Modification_and_Motif_Analysis.1.xml protocol, but since .cmp.h5 have already been generated I thought it would be nice to start directly with the .cmp.h5.
Also I know I could just add the proper Motif detection prototols in my realigning xml file, so everything could be run in one step, but for some reasons I want to keep them separate.
Cheers,
I'd like to know how (or if it is possible) to start a smrtpipe job with .cmp.h5 instead of .bas.h5 files? Say for instance I sucessfully ran a realigning job with smrtpipe which generates a couple of files of which a .cmp.5. Then I'd like to run the RS_Modification_and_Motif_Analysis.1.xml protocol, but since .cmp.h5 have already been generated I thought it would be nice to start directly with the .cmp.h5.
Also I know I could just add the proper Motif detection prototols in my realigning xml file, so everything could be run in one step, but for some reasons I want to keep them separate.
Cheers,
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