Hi everyone,
I ran cuffdiff on treated/control samples to look for mRNA isoforms. I am especially interested in isoforms that affect 3'UTR lengths. Does anyone know how to pick out those isoforms that affect 3'UTR length?
Could I just do an intersect with the known 3'UTR coordinates?
I ran cuffdiff on treated/control samples to look for mRNA isoforms. I am especially interested in isoforms that affect 3'UTR lengths. Does anyone know how to pick out those isoforms that affect 3'UTR length?
Could I just do an intersect with the known 3'UTR coordinates?