Hi,
I downloaded a bam file from NCBI and am unable to index it. Here is what I've done:
samtools index file.bam
Error message:
[bam_header_read] EOF marker is absent.
I haven't really found anything in thread archives that give this error with a bam file so am pretty sure I'm doing something fundamentally wrong. I'm a samtools and bam file newbie so any help would be much appreciated!
Thanks!
I downloaded a bam file from NCBI and am unable to index it. Here is what I've done:
samtools index file.bam
Error message:
[bam_header_read] EOF marker is absent.
I haven't really found anything in thread archives that give this error with a bam file so am pretty sure I'm doing something fundamentally wrong. I'm a samtools and bam file newbie so any help would be much appreciated!
Thanks!
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