Hi,
I have used bwa to align paired-end read against to refseq and output sam file.
Now,I have a problem.
If I want to pick out the read like bowtie's parameter --un.
How can I do like bowtie's output?
Like bowite's maual
I have used bwa to align paired-end read against to refseq and output sam file.
Now,I have a problem.
If I want to pick out the read like bowtie's parameter --un.
How can I do like bowtie's output?
Like bowite's maual
Paired-end reads will be written to two parallel files with _1 and _2 inserted in the filename, e.g., if <filename> is unaligned.fq, the #1 and #2 mates that fail to align will be written to unaligned_1.fq and unaligned_2.fq respectively.
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