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Old 02-25-2015, 08:46 PM   #1
Anuja jain
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Location: Delhi, india

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Thumbs up SNP detection with bcftools where [main] unrecognized cammand error occurs

hello friends

I am very new comer in the field of genomics and transcriptomics as well as in SEQanswers site so kindly help me to sort out the following error.

When i am giving "bcftools call -mv variation.bcf > variation250.vcf " command to bcftools that already present inside the SAMtools-0.1., it shows [main] unrecognized error while I have already set the path of bcftools.

It also give the same error with "bcftools stats variation_filter.vcf > variation_stats.vchk" command.

What should i do to solve this problem ?

thanks in advance
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Old 02-26-2015, 02:21 AM   #2
madhavi
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Location: India

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hii everyone
samtools showing an error when i tried to create a bcf file
[bcf_sync] incorrect number of fields (0 != 5) at 0:0 [afs] 0:0.000
how to solve this? thank u
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